Introduction to the Special Issue on COVID-19.

The COVID-19 pandemic has been a global event affecting all aspects of human life and society, including acoustic aspects. In this Special Issue on COVID-19 and acoustics, we present 48 papers discussing the acoustical impacts of the pandemic and how we deal with it. The papers are divided into seven categories which include: physical masking and speech production, speech perception, noise, the underwater soundscape, the urban soundscape, pathogen transmissibility, and medical diagnosis.

Multiscale multiphysics data-informed modeling for three-dimensional ocean acoustic simulation and prediction.

Three-dimensional (3D) underwater sound field computations have been used for a few decades to understand sound propagation effects above sloped seabeds and in areas with strong 3D temperature and salinity variations. For an approximate simulation of effects in nature, the necessary 3D sound-speed field can be made from snapshots of temperature and salinity from an operational data-driven regional ocean model. However, these models invariably have resolution constraints and physics approximations that exclude features that can have strong effects on acoustics, example features being strong submesoscale fronts and nonhydrostatic nonlinear internal waves (NNIWs). Here, work to predict NNIW fields to improve 3D acoustic forecasts using an NNIW model nested in a tide-inclusive data-assimilating regional model is reported. The work was initiated under the Integrated Ocean Dynamics and Acoustics project. The project investigated ocean dynamical processes that affect important details of sound-propagation, with a focus on those with strong intermittency (high kurtosis) that are challenging to predict deterministically. Strong internal tides and NNIW are two such phenomena, with the former being precursors to NNIW, often feeding energy to them. Successful aspects of the modeling are reported along with weaknesses and unresolved issues identified in the course of the work.

Variability of phase and amplitude fronts due to horizontal refraction in shallow water.

The variability of the interference pattern of a narrow-band sound signal in a shallow water waveguide in the horizontal plane in the presence of horizontal stratification, in particular due to linear internal waves, is studied. It is shown that lines of constant phase (a phase front) and lines of constant amplitude/envelope (an amplitude front) for each waveguide mode may have different directions in the spatial vicinity of the point of reception. The angle between them depends on the waveguide's parameters, the mode number, and the sound frequency. Theoretical estimates and data processing methodology for obtaining these angles from experimental data recorded by a horizontal line array are proposed. The behavior of the angles, which are obtained for two episodes from the Shallow Water 2006 (SW06) experiment, show agreement with the theory presented.

Bottom attenuation estimation using sound intensity fluctuations due to mode coupling by nonlinear internal waves in shallow water.

Analyses of fluctuations of low frequency signals (300 ± 30 Hz) propagating in shallow water in the presence of nonlinear internal waves (NIWs) in the Shallow Water 2006 experiment are carried out. Signals were received by a vertical line array at a distance of ∼20 km from the source. A NIW train was moving totally inside of the acoustic track, and the angle between the wave front of the NIW and the acoustic track in the horizontal plane was ∼10°. It is shown that the spectrum of the sound intensity fluctuations contains peaks corresponding to the coupling of pairs of propagating modes. Analysis of spectra at different hydrophone depths, and also summed over depth allows the authors to estimate attenuation in the bottom sediments.

Editorial-A brief journal status update.

In this editorial, the Editor-in-Chief of the Journal of the Acoustical Society of America gives a brief overview of the present status of the Journal, emphasizing the events that have occurred over the past one and one half years. Topics addressed include: (1) The recent transition to the Editorial Manager peer review system, (2) new features that have been implemented in the Journal, (3) the incoming Managing Editor, (4) the publications component of the Acoustical Society's Strategic Plan, (5) new and revived article types, (6) open access, and (7) Journal metrics and statistics.

Three-dimensional coupled mode analysis of internal-wave acoustic ducts.

A fully three-dimensional coupled mode approach is used in this paper to describe the physics of low frequency acoustic signals propagating through a train of internal waves at an arbitrary azimuth. A three layer model of the shallow water waveguide is employed for studying the properties of normal modes and their coupled interaction due to the presence of nonlinear internal waves. Using a robust wave number integration technique for Fourier transform computation and a direct global matrix approach, an accurate three-dimensional coupled mode full field solution is obtained for the tonal signal propagation through straight and parallel internal waves. This approach provides accurate results for arbitrary azimuth and includes the effects of backscattering. This enables one to provide an azimuthal analysis of acoustic propagation and separate the effects of mode coupled transparent resonance, horizontal reflection and refraction, the horizontal Lloyd's mirror, horizontal ducting and anti-ducting, and horizontal tunneling and secondary ducting.

Stochastic flux analysis of chemical reaction networks.

BACKGROUND: Chemical reaction networks provide an abstraction scheme for a broad range of models in biology and ecology. The two common means for simulating these networks are the deterministic and the stochastic approaches. The traditional deterministic approach, based on differential equations, enjoys a rich set of analysis techniques, including a treatment of reaction fluxes. However, the discrete stochastic simulations, which provide advantages in some cases, lack a quantitative treatment of network fluxes. RESULTS: We describe a method for flux analysis of chemical reaction networks, where flux is given by the flow of species between reactions in stochastic simulations of the network. Extending discrete event simulation algorithms, our method constructs several data structures, and thereby reveals a variety of statistics about resource creation and consumption during the simulation. We use these structures to quantify the causal interdependence and relative importance of the reactions at arbitrary time intervals with respect to the network fluxes. This allows us to construct reduced networks that have the same flux-behavior, and compare these networks, also with respect to their time series. We demonstrate our approach on an extended example based on a published ODE model of the same network, that is, Rho GTP-binding proteins, and on other models from biology and ecology. CONCLUSIONS: We provide a fully stochastic treatment of flux analysis. As in deterministic analysis, our method delivers the network behavior in terms of species transformations. Moreover, our stochastic analysis can be applied, not only at steady state, but at arbitrary time intervals, and used to identify the flow of specific species between specific reactions. Our cases study of Rho GTP-binding proteins reveals the role played by the cyclic reverse fluxes in tuning the behavior of this network.

Enhanced acoustic mode coupling resulting from an internal solitary wave approaching the shelfbreak in the South China Sea.

Internal waves and bathymetric variation create time- and space-dependent alterations in the ocean acoustic waveguide, and cause subsequent coupling of acoustic energy between propagating normal modes. In this paper, the criterion for adiabatic invariance is extended to the case of an internal solitary wave (ISW) encountering a sloping bathymetry (i.e., continental shelfbreak). Predictions based on the extended criterion for adiabatic invariance are compared to experimental observations from the Asian Seas International Acoustics Experiment. Using a mode 1 starter field, results demonstrate time-dependent coupling of mode 1 energy to higher adjacent modes, followed by abrupt coupling of mode 5-7 energy to nonadjacent modes 8-20, produces enhanced mode coupling and higher received levels downrange of the oceanographic and bathymetric features. Numerical simulations demonstrate that increasing ISW amplitude and seafloor slope enhance the coupling of energy to adjacent and nonadjacent modes. This enhanced coupling is the direct result of the simultaneous influence of the ISW and its proximity to the shelfbreak, and, compared to the individual effect of the ISW or shelfbreak, has the capacity to scatter 2-4 times the amount of acoustic energy from below the thermocline into the upper water column beyond the shelfbreak in realistic environments.

Horizontal ducting of sound by curved nonlinear internal gravity waves in the continental shelf areas.

The acoustic ducting effect by curved nonlinear gravity waves in shallow water is studied through idealized models in this paper. The internal wave ducts are three-dimensional, bounded vertically by the sea surface and bottom, and horizontally by aligned wavefronts. Both normal mode and parabolic equation methods are taken to analyze the ducted sound field. Two types of horizontal acoustic modes can be found in the curved internal wave duct. One is a whispering-gallery type formed by the sound energy trapped along the outer and concave boundary of the duct, and the other is a fully bouncing type due to continual reflections from boundaries in the duct. The ducting condition depends on both internal-wave and acoustic-source parameters, and a parametric study is conducted to derive a general pattern. The parabolic equation method provides full-field modeling of the sound field, so it includes other acoustic effects caused by internal waves, such as mode coupling/scattering and horizontal Lloyd's mirror interference. Two examples are provided to present internal wave ducts with constant curvature and meandering wavefronts.

Horizontal refraction of propagating sound due to seafloor scours over a range-dependent layered bottom on the New Jersey shelf.

Three-dimensional propagation effects of low frequency sound from 100 to 400 Hz caused by seafloor topography and range-dependent bottom structure over a 20 km range along the New Jersey shelf are investigated using a hybrid modeling approach. Normal modes are used in the vertical dimension, and a parabolic-equation approximate model is applied to solve the horizontal refraction equation. Examination of modal amplitudes demonstrates the effect of environmental range dependence on modes trapped in the water column, modes interacting with the bottom, and modes trapped in the bottom. Using normal mode ray tracing, topographic features responsible for three-dimensional effects of horizontal refraction and focusing are identified. These effects are observed in the measurements from the Shallow Water 2006 experiment. Specifically, signals from a pair of fixed sources recorded on a horizontal line array sitting on the seafloor show an intensification caused by horizontal focusing due to the seabed topography of 4 dB along the array.